chr6:88861208:T>G Detail (hg19) (CNR1)
Information
Genome
Assembly | Position |
---|---|
hg19 | chr6:88,861,208-88,861,208 |
hg38 | chr6:88,151,489-88,151,489 View the variant detail on this assembly version. |
HGVS
Type | Transcript | Protein |
---|---|---|
RefSeq | NM_001160226.1:c.-63-6152A>C | |
NM_001160259.1:c.-63-6152A>C | ||
NM_016083.4:c.-63-6152A>C |
Summary
MGeND
Clinical significance | |
Variant entry | |
GWAS entry | |
Disease area statistics | Show details |
Frequency
JP | HGVD:[No Data.] |
ToMMo:0.031 | |
NCBN:[No Data.] | |
NCBN(Hondo):[No Data.] | |
NCBN(Ryukyu):[No Data.] | |
East asia | ExAC:[No Data.] |
Prediction
ClinVar
Clinical Significance | |
Review star | [No Data.] |
Show details |
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score | Disease name | Description | Source | Pubmed | Links |
---|---|---|---|---|---|
<0.001 | Polysubstance dependence | We examined the association of 4 SNPs (rs6928499, rs806379, rs1535255, rs2023239... | BeFree | 16741937 | Detail |
Annotation
Annotations
Descrption | Source | Links |
---|---|---|
We examined the association of 4 SNPs (rs6928499, rs806379, rs1535255, rs2023239) in the distal regi... | DisGeNET | Detail |
Overlapped Transcript
Gene | Transcript ID | Chromosome | Start | Stop | Links |
---|
- Gene
- -
- dbSNP
- rs1535255 dbSNP
- Genome
- hg19
- Position
- chr6:88,861,208-88,861,208
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs1535255
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.0308
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 517
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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